Sorry, it's been a while since I've updated on how my computer is working. I was following Maratanos and I unchecked the automatic restart, was going to wait for my computer to reboot and read the log and... nothing restarted.
I was able to play from Sam getting the plans and parts for the anti-hypnosis helmet all the way to the end without any problems.
My game path was linear with solving all the puzzles, so I didn't look around at things too much. When I start replaying Situation Comedy, I'll notify you guys if I have any more problems.