The relationship seemed a bit abusive to me, honestly. And I had major problems with a few things, like her freak out when she saw Ridley, considering that at that point she'd defeated him five times before (Zero Mission, Prime, twice in Corruption, and Super Metroid) and didn't even flinch, but she totally fell to pieces this time.
It also annoyed me, story-wise, that Samus's suit had purely defensive capabilities that she deactivated with everything else until Adam authorized it. She ran through a superheated room and took damage the whole time, and she wouldn't activate the purely defensive Varia feature until Adam told her to. And Adam saw exactly what was happening the whole time and still didn't tell her to turn it on until after that room.