Most likely i would assume lee and clementine escape to the countryside and meet up with christa and omid(like planned). The four of them devise a decent plan that the 3 of them will go. Lee follows the until he can no longer move(like in the original ending) and its up to clemetine to either kill him or have them move on without him. If clementine shoots him, it shows lee's body fall backwards into a field of flowers with an illuminating light over him as it cuts to clementine crying. If they leave him then the 3 slowly walk away as lee closes his eyes and slowly drifts away as the infection takes over.
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